Production
  1. Production

copy_number_plotter

Public
  1. Production
  2. copy_number_plotter

Commits

AuthorCommitMessageCommit dateIssues
Dustin BleileDustin Bleile
1ed861b36abMPull request #24: Release/v1.0.0 SDEV-4824Merge in PROD/copy_number_plotter from release/v1.0.0_SDEV-4824 to master * commit '7cee48e5f9aae6745f319991da3e50aebbf02704': SDEV-4824 - skip full test_zzz_copy_number_plotter on bamboo Release v1.0.0 New Features: * SDEV-4824 - simple_singles labels - include the POG/PRO ID, tumor LIB, and biop * SDEV-4824 - feature - --check-only - find data sources & existing plots and exit. Improve...SDEV-4824
Dustin BleileDustin Bleile
7cee48e5f9aSDEV-4824 - skip full test_zzz_copy_number_plotter on bambooSDEV-4824
Dustin BleileDustin Bleile
360bae4a9e0Release v1.0.0New Features: * SDEV-4824 - simple_singles labels - include the POG/PRO ID, tumor LIB, and biop * SDEV-4824 - feature - --check-only - find data sources & existing plots and exit. Improvements: * Makefile - dist - 'twine<6' and 'pkginfo>1.10' * SDEV-4824 - Makefile - setuptools<80 - current buildout incompatibility.SDEV-4824
Dustin BleileDustin Bleile
509a5da589aSDEV-4824 - Makefile - setuptools<80 - current buildout incompatibility.SDEV-4824
Dustin BleileDustin Bleile
d0efa412fd4MPull request #23: Improvement/SDEV-4824 simple singles labelsMerge in PROD/copy_number_plotter from improvement/SDEV-4824_simple_singles_labels to develop * commit 'afef4fd198d687c03b98e2514a331f0be6508297': SDEV-4824 - feature - --check-only - find data sources & existing plots and exit. SDEV-4824 - simple_singles labels - include the POG/PRO ID, tumor LIB, and biopSDEV-4824
Dustin BleileDustin Bleile
afef4fd198dSDEV-4824 - feature - --check-only - find data sources & existing plots and exit.SDEV-4824
Dustin BleileDustin Bleile
b74a7e4b14fSDEV-4824 - simple_singles labels - include the POG/PRO ID, tumor LIB, and biopSDEV-4824
Dustin BleileDustin Bleile
48b1c58118bMakefile - dist - 'twine<6' and 'pkginfo>1.10'
Dustin BleileDustin Bleile
e4fc9ac1b71MMerge branch 'master' of https://svn.bcgsc.ca/bitbucket/scm/prod/copy_number_plotter into develop
Dustin BleileDustin Bleile
bf5cff47993MPull request #22: Release/v0.16.2 biopsy label formatMerge in PROD/copy_number_plotter from release/v0.16.2_biopsy_label_format to master * commit '6e466d188bc57bf105f7150351ccef930c397c3f': Release v0.16.2 Improvement: * SDEV-4824 - split biopsy label from library name by underscore in plot legends. Bugfix: * SDEV-4824 - Makefile - fix dist to first properly install. SDEV-4824 - split biopsy label from library name by underscore in plot l...SDEV-4824
Dustin BleileDustin Bleile
3d8ce7078a0MPull request #21: Feature/SDEV-4824 v1 testingMerge in PROD/copy_number_plotter from feature/SDEV-4824_v1_testing to develop * commit '5c6fc9f6bbe393eb6a7532547838b04f1fd78806': SDEV-4824 - split biopsy label from library name by underscore in plot legends. SDEV-4824 - Makefile - fix dist to first properly install.SDEV-4824
Dustin BleileDustin Bleile
6e466d188bcRelease v0.16.2Improvement: * SDEV-4824 - split biopsy label from library name by underscore in plot legends. Bugfix: * SDEV-4824 - Makefile - fix dist to first properly install.SDEV-4824
Dustin BleileDustin Bleile
5c6fc9f6bbeSDEV-4824 - split biopsy label from library name by underscore in plot legends.SDEV-4824
Dustin BleileDustin Bleile
0442c5af30fSDEV-4824 - Makefile - fix dist to first properly install.SDEV-4824
Dustin BleileDustin Bleile
b52d1be2081MPull request #20: Release/v0.16.1 validationMerge in PROD/copy_number_plotter from release/v0.16.1_validation to master * commit 'de3559f9a03ddbf722d91d46a38f11291a069086': Release v0.16.1 New Feature: * SDEV-4824 - add --version option to print version string Improvements: * SDEV-4824 - use abs path of sys.argv[0] and remove symlinks for commandline log. * SDEV-4824 - update help for --libraries option and warn of deprecation. S...SDEV-4824
Dustin BleileDustin Bleile
de3559f9a03MMerge branch 'develop' of https://svn.bcgsc.ca/bitbucket/scm/prod/copy_number_plotter into release/v0.16.1_validation
Dustin BleileDustin Bleile
f58bf8175a9Release v0.16.1New Feature: * SDEV-4824 - add --version option to print version string Improvements: * SDEV-4824 - use abs path of sys.argv[0] and remove symlinks for commandline log. * SDEV-4824 - update help for --libraries option and warn of deprecation.SDEV-4824
Dustin BleileDustin Bleile
f45145ea6ecMPull request #19: Feature/SDEV-4824 v1 testingMerge in PROD/copy_number_plotter from feature/SDEV-4824_v1_testing to develop * commit 'd711fffae735f6d964605b627bc97ec435c49825': SDEV-4824 - use abs path and remove symlinks for commandline log. SDEV-4824 - add --version option to print version string SDEV-4824 - update help for libraries and warn of deprecation.SDEV-4824
Dustin BleileDustin Bleile
d711fffae73SDEV-4824 - use abs path and remove symlinks for commandline log.SDEV-4824
Dustin BleileDustin Bleile
e9160943d08SDEV-4824 - add --version option to print version stringSDEV-4824
Dustin BleileDustin Bleile
a16fa6a1a24SDEV-4824 - update help for libraries and warn of deprecation.SDEV-4824
Dustin BleileDustin Bleile
34c9e30f5b5MPull request #18: Release/v0.16.0 SDEV-4824 out updatesMerge in PROD/copy_number_plotter from release/v0.16.0_SDEV-4824_out_updates to master * commit 'b05665af4b577fe0d78a502c9b9530ae03941548': Release v0.16.0 - beta testing release New Features: * SDEV-4824 - update default out folder pattern.Purple output one directory higher. * SDEV-4824 - add logging levels - --verbose and --quiet Improvements: * SDEV-4824 - README.md - Markdown All in O...SDEV-4824
Dustin BleileDustin Bleile
b05665af4b5Release v0.16.0 - beta testing releaseNew Features: * SDEV-4824 - update default out folder pattern.Purple output one directory higher. * SDEV-4824 - add logging levels - --verbose and --quiet Improvements: * SDEV-4824 - README.md - Markdown All in One table of contents. * SDEV-4824 - update README.md options and fix some violations.SDEV-4824
Dustin BleileDustin Bleile
44b09322e56MPull request #17: Feature/SDEV-4824 v1 testingMerge in PROD/copy_number_plotter from feature/SDEV-4824_v1_testing to develop * commit '0f12233e4e20cdfc99c2a97226fdf5231bd02952': SDEV-4824 - update default out folder pattern. Purple output one directory higher. update README options section SDEV-4824 - reduce outputs - convert progress outputs to debug. SDEV-4824 - add logging levels - --verbose and --quiet SDEV-4824 Markdown Al...SDEV-4824
Dustin BleileDustin Bleile
0f12233e4e2SDEV-4824 - update default out folder pattern. Purple output one directory higher.SDEV-4824
Dustin BleileDustin Bleile
b02cd74d078update README options section
Dustin BleileDustin Bleile
13315f29ab4SDEV-4824 - reduce outputs - convert progress outputs to debug.SDEV-4824
Dustin BleileDustin Bleile
b6ecf1c01edSDEV-4824 - add logging levels - --verbose and --quietSDEV-4824
Dustin BleileDustin Bleile
89432c56801SDEV-4824 Markdown All in One table of contents.SDEV-4824
Dustin BleileDustin Bleile
440d8f4197cSDEV-4824 - update README.md options and fix some violations.SDEV-4824
Dustin BleileDustin Bleile
441f448ab6bMPull request #16: Release/v0.15.0 SDEV-4824 cleanupMerge in PROD/copy_number_plotter from release/v0.15.0_SDEV-4824_cleanup to master * commit 'eb0f6d9d05bf4df4002874506e4bc11774ed8771': Release v0.15.0 New Feature: * CLININFO-673 - CNV circos plot - new 'circos' plot_format Improvements: * SDEV-4824 - biop_label constructed using library. SDEV-4824 - make biop_label out of <biop>_<tumour_lib> SDEV-4824 - refactor - simplify plot_singl...2 Jira issues
Dustin BleileDustin Bleile
eb0f6d9d05bRelease v0.15.0New Feature: * CLININFO-673 - CNV circos plot - new 'circos' plot_format Improvements: * SDEV-4824 - biop_label constructed using library.2 Jira issues
Dustin BleileDustin Bleile
0e72407960bSDEV-4824 - make biop_label out of <biop>_<tumour_lib>SDEV-4824
Dustin BleileDustin Bleile
0fef77cd354SDEV-4824 - refactor - simplify plot_single_chr section.SDEV-4824
Dustin BleileDustin Bleile
0aa62657bedSDEV-4824 - refactor - call plotting functions with variable names.SDEV-4824
Dustin BleileDustin Bleile
e7316401ff2SDEV-4824 - allow incomplete input libraries.SDEV-4824
Dustin BleileDustin Bleile
42e8c1d5e4bSDEV-4824 - cleanup - use X_INT and Y_INT constants.SDEV-4824
Dustin BleileDustin Bleile
4487634d127SDEV-4824 - bugfix - do not override args.logfile if args.out is also given.SDEV-4824
Dustin BleileDustin Bleile
35fd9ee9db7silence segment_chr assignment type warnings.
Dustin BleileDustin Bleile
d3181c2e2f1fix typing errors
John DupuisDustin BleileJohn Dupuis
7259e8d6b5fMPull request #15: Cnv circos plotterMerge in PROD/copy_number_plotter from cnv_circos_plotter to develop * commit '0467b2a9c88ae85e06d3f650d32bc2aada147ae8': CLININFO-673.linting changes for circos addition CLININFO-673.updated circos legend CLININFO-673.added cnv circos featureCLININFO-673
John DupuisJohn Dupuis
0467b2a9c88CLININFO-673.linting changes for circos additionCLININFO-673
John DupuisJohn Dupuis
74c89f239d3CLININFO-673.updated circos legendCLININFO-673
John DupuisJohn Dupuis
1be357dc0d2CLININFO-673.added cnv circos featureCLININFO-673
Dustin BleileDustin Bleile
ca650a8142cMPull request #14: SDEV-3969 testingMerge in PROD/copy_number_plotter from SDEV-3969_testing to develop * commit 'aa9d3351c6a3a0966d5fc81d53680d758b388ff7': Makefile - fix release and dist both trying to upload to pypi Release v0.14.0 * add version to default output folders * os.umask(2) - default group writable SDEV-3969 - add version to default output folder. os.umask(2) for default group writable outputs. bugfix Ma...SDEV-3969
Dustin BleileDustin Bleile
aa9d3351c6aMakefile - fix release and dist both trying to upload to pypi
Dustin BleileDustin Bleile
8a803bdad6aMPull request #13: SDEV-3969 testingMerge in PROD/copy_number_plotter from SDEV-3969_testing to master * commit '105c526f1cc8f3858ef444c692e8a68cd157088b': Release v0.14.0 * add version to default output folders * os.umask(2) - default group writable SDEV-3969 - add version to default output folder. os.umask(2) for default group writable outputs. bugfix Makefile - ensure zc.buildout is installed for release bugfix Mak...SDEV-3969
Dustin BleileDustin Bleile
105c526f1ccRelease v0.14.0 * add version to default output folders * os.umask(2) - default group writable
Dustin BleileDustin Bleile
394bea4a737SDEV-3969 - add version to default output folder. os.umask(2) for default group writable outputs.SDEV-3969
Dustin BleileDustin Bleile
803f30efb54bugfix Makefile - ensure zc.buildout is installed for release