Merge pull request #95 in DAT/vardb1_cron from master to development* commit '0dcf8ece5fad7b9081a88589342864a3308860aa':
bump patch number
bump patch number
Bump version to 3.6.2
Merge pull request #94 in DAT/vardb1_cron from release/3.6.2 to master* commit 'b1038f9016ebfe4464e4b80b35283fee057e48de':
bump patch number
bump patch number
remove quotation marks
add mgitest queries to vardb update env
fix possible typo
fix project name in projects-list.txt
change dash to underscore
remove error
use safer name for MGITEST
update readme with add-new-project info
add project data and helper func
Merge pull request #93 in DAT/vardb1_cron from feature/VDB-807-add-mgi-test to development* commit '8dc0539fe26f813eb6e2c900039cdf8704fc0af5':
remove quotation marks
add mgitest queries to vardb update env
fix possible typo
fix project name in projects-list.txt
change dash to underscore
remove error
use safer name for MGITEST
update readme with add-new-project info
add project data and helper func
Merge pull request #91 in DAT/vardb1_cron from release/3.6.2 to master* commit '4e710bd594ba172f455e9390c744045d0fc50efd':
Bump version to 3.6.2
Remove useless db check
Add autogenerate files to gitignore
Log the projects configured for germline queries
Add process id to log name to avoid clashes
Add external profyle to input list
Add instructions for germline query projects
Use short form
Add ENV var to readme
Add db name env var for configur...
Merge pull request #90 in DAT/vardb1_cron from feature/remove-db-check to development* commit '795955e57142f32fbe33f89678344fe8250b535e':
Remove useless db check
Merge pull request #89 in DAT/vardb1_cron from bugfix/VDB-765-external-profyle-input-list to development* commit '4fe78bb7dc04f0ecd4638d9d961a20667c4b97e1':
Add autogenerate files to gitignore
Log the projects configured for germline queries
Add process id to log name to avoid clashes
Add external profyle to input list
Add instructions for germline query projects
Merge pull request #88 in DAT/vardb1_cron from feature/SYS-57230-config-db-name to development* commit 'b61f4884e720f6159607cd9e6ce290a035bca0cd':
Use short form
Add ENV var to readme
Add db name env var for configurable deployment
Bump version to 3.6.1
Merge pull request #87 in DAT/vardb1_cron from release/v3.6.1 to master* commit '9bdd0d6b4680860ca9023dd35e093ab485e88694':
Bump version to 3.6.1
VDB-765: Use glob to allow external profyle data paths
Move to separate script to control logging
Add ability to run germline query alone without args
Separate germline query from loader dict
Merge pull request #85 in DAT/vardb1_cron from feature/VDB-765-run-germline-separate to development* commit '54419bf09f6067e859fe473c59eaca2ddfc421c6':
Move to separate script to control logging
Add ability to run germline query alone without args
Separate germline query from loader dict
Merge pull request #86 in DAT/vardb1_cron from feature/VDB-765-configure-external-profyle to development* commit '36b8375a5be238f365b7f5e766f6141ea9dfdafe':
VDB-765: Use glob to allow external profyle data paths
Merge pull request #83 in DAT/vardb1_cron from development to master* commit '8488f4eb24faec0febd5c90c4cf808db08f02612':
VDB-778: expect library strat and ethnicitiy from bioapps
VDB-778: Document bioapps metadata column req
VDB-778: Relax library matching pattern to any length
Bump version to 3.6
Silence from_items deprecated warning
Silence default sorting warning
Remove lims interactions
Merge pull request #84 in DAT/vardb1_cron from feature/VDB-778-remove-lims to development* commit 'fd8a5cf0e9e6b942db43b1fa05a749e6c8f02bac':
VDB-778: expect library strat and ethnicitiy from bioapps
Merge pull request #81 in DAT/vardb1_cron from feature/VDB-778-remove-lims to development* commit '34a6ea0c6e222ae86907c0b29703dc009af2144b':
Remove lims interactions
Merge pull request #80 in DAT/vardb1_cron from bugfix/VDB-765-fix-typo to master* commit '75790ce8f0ddd341c1d10cf7cec2a46ad431321d':
Fix typo and bump version to 3.5.3
Eleanor Lewis
Caralyn Reisle